Examples

This section contains detailed examples of using StochasticGene.jl for various analysis scenarios.

Basic Examples

RNA Count Analysis

• Basic Telegraph Model: Fitting a simple two-state model to RNA count data
• Multi-State Model: Fitting a model with multiple gene states
• RNA Histogram Analysis: Analyzing RNA count distributions

Live Cell Imaging

• MS2 Reporter Analysis: Analyzing MS2 reporter data
• Trace Analysis: Analyzing time series data

Dwell Time Analysis

• Basic Dwell Times: Analyzing basic dwell time distributions
• RNA Dwell Time Analysis: Advanced dwell time analysis

Advanced Examples

Parallel Processing

• Parallel Processing: Using parallel processing for large datasets

Model Analysis

• Model Validation: Validating model assumptions and results
• Parameter Analysis: Analyzing model parameters and their uncertainties

Contributing Examples

We welcome contributions of new examples! If you have an interesting use case or analysis workflow, please consider sharing it with the community. See the Contributing guide for more information.